In this article, the authors present Protease Activity Analysis (PAA), a toolkit for the preprocessing, visualization, machine learning analysis, and querying of protease activity data sets in order to facilitate protease research. PAA leverages a Python-based object-oriented implementation that provides a modular framework for streamlined analysis across three major components. Overall, PAA offers the protease community a breadth of computational tools to streamline research, taking a step toward standardizing data analysis across the field and in chemical biology and biochemistry at large.
Ava P. Soleimany*, Sangeeta N. Bhatia* et al. Massachusetts Institute of Technology and Harvard University, United States
ACS Omega 2022, 7, 28, 24292-24301